Week 5

Feb 07 2022    
Week 5: Drs. Susan Tapert and Maryann Martone talk about ABCD neurocognitive assessments, FAIR Data, and Semantic Markup 1.
Help and Resources: If you have questions about this week's material please post them to the ABCD-ReproNim Neurostars or the ABCD-ReproNim Slack.
Week 5 Assignments:


Week 5 Data Exercise: This week we ask that students complete a Data Exercise that asks questions about ABCD Neurocognitive Assessments and well as principles of FAIR data and Semantic Markup. Please complete the Week 5 Data Exercise after viewing the Week 5 videos. Solutions for this week’s data exercise can be found on our GitHub

ABCD Data Access Confirmation: In order to access ABCD Study data you will need to obtain a Data Use Certification (DUC) from the NDA. We provide instructions on how to obtain ABCD data access to help with this process. Once you have an approved DUC please complete our ABCD Data Access Confirmation. Note that you do not need to have ABCD data access in order to take this course. This assignment is optional and does not count towards completion of the course. However, students who do not successfully complete this assignment will not be allowed to participate in Project Month.

ABCD-ReproNim JupyterHub Access Request: ABCD-ReproNim students with active DUCs can access to the new ABCD-ReproNim JupyterHub, a cloud-based scientific computing platform that is fully accessible through an internet browser (see this link for details about the JupyterHub project!) This document introduces the ABCD-ReproNim JupyterHub, how to access it, and outlines some basic usage rules. Students can use the Hub to work on Data Exercises and perform ABCD data analysis projects during the course. ABCD-ReproNim staff will grant access to students with active DUCs who submit an Access Request. Students without an active NDA DUC can follow the instructions here to access the same computational environment locally via Docker.

Instructor Question and Answer Webcast Recording

Recorded in 2020. Note that course-related announcement made during this recording may be out of date. Please see the top of this page for 2022 Course announcements.

Week 5 Q&A Doc: Click here for written answers to the Q&A Doc.

Important Links and Platforms: